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sl2pm 1.0.1 documentation

GitHub

SL2PM

Contents:

sl2pm
- sl2pm package

Tracking a quantum dot

Demo for how to track single quantum dots on images

Tracking a red blood cell

Demo for how to track a single RBC from its kymogram and estimate the RBC’s speed

Tracking a capillary

Demo for how to track a capillary (estimate radius and center position) with fluorescently-labeled plasma

Calibrating photomultiplier tubes

Demo for how to quickly calibrate photomultiplier tubes (PMT) on your two-photon microscope (2PM)

Calibrating point-spread function for microvessel tracking

Demo for how to calibrate PSF for estimating vessels diameters with super-localization

Calibrating point-spread function for microvessel tracking with the `ultimate fit`

Demo for how to track a blood vessel in time and calibrate the microscope’s PSF in a single fit (“ultimate fit”).

Removing artefact from output of photomultiplier tubes

Demo for how to fit a single period of biastable bias for further removal

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.rst

sl2pm.misc module

Contents

fitted_params()

sl2pm.misc module#

sl2pm.misc.fitted_params(opt_result, p_names)[source]#: Parse fitted parameters and their error bars from optimization result (fit).

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sl2pm.bistable_bias module

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sl2pm.models module

Contents

fitted_params()

By Nikolay Kutuzov

© Copyright 2024, Nikolay Kutuzov, University of Copenhagen.